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John Black

TitleSenior Scientist
InstitutionThe Hospital for Sick Children
DepartmentImmunology
Address555 University Avenue
Toronto ON M5G 1X8
Phone416-813-1500
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    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Bielinski SJ, St Sauver JL, Olson JE, Larson NB, Black JL, Scherer SE, Bernard ME, Boerwinkle E, Borah BJ, Caraballo PJ, Curry TB, Doddapaneni H, Formea CM, Freimuth RR, Gibbs RA, Giri J, Hathcock MA, Hu J, Jacobson DJ, Jones LA, Kalla S, Koep TH, Korchina V, Kovar CL, Lee S, Liu H, Matey ET, McGree ME, McAllister TM, Moyer AM, Muzny DM, Nicholson WT, Oyen LJ, Qin X, Raj R, Roger VL, Rohrer Vitek CR, Ross JL, Sharp RR, Takahashi PY, Venner E, Walker K, Wang L, Wang Q, Wright JA, Wu TJ, Wang L, Weinshilboum RM. Cohort Profile: The Right Drug, Right Dose, Right Time: Using Genomic Data to Individualize Treatment Protocol (RIGHT Protocol). Int J Epidemiol. 2019 Aug 04. PMID: 31378813.
      View in: PubMed
    2. Devarajan S, Moon I, Ho MF, Larson NB, Neavin DR, Moyer AM, Black JL, Bielinski SJ, Scherer SE, Wang L, Weinshilboum RM, Reid JM. Pharmacogenomic Next-Generation DNA Sequencing: Lessons from the Identification and Functional Characterization of Variants of Unknown Significance in CYP2C9 and CYP2C19. Drug Metab Dispos. 2019 Apr; 47(4):425-435. PMID: 30745309.
      View in: PubMed
    3. Hooten WM, Hu D, Cunningham JM, Black JL. Effect of catechol-O-methyltransferase (rs4680) single-nucleotide polymorphism on opioid-induced hyperalgesia in adults with chronic pain. Mol Pain. 2019 Jan-Dec; 15:1744806919848929. PMID: 31041874.
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    4. Hooten WM, Biernacka JM, O'Brien TG, Cunningham JM, Black JL. Associations of catechol-O-methyltransferase (rs4680) single nucleotide polymorphisms with opioid use and dose among adults with chronic pain. Pain. 2019 Jan; 160(1):263-268. PMID: 30211780.
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    5. Goetz MP, Suman VJ, Reid JM, Northfelt DW, Mahr MA, Ralya AT, Kuffel M, Buhrow SA, Safgren SL, McGovern RM, Black J, Dockter T, Haddad T, Erlichman C, Adjei AA, Visscher D, Chalmers ZR, Frampton G, Kipp BR, Liu MC, Hawse JR, Doroshow JH, Collins JM, Streicher H, Ames MM, Ingle JN. First-in-Human Phase I Study of the Tamoxifen Metabolite Z-Endoxifen in Women With Endocrine-Refractory Metastatic Breast Cancer. J Clin Oncol. 2017 Oct 20; 35(30):3391-3400. PMID: 28854070.
      View in: PubMed
    6. St Sauver JL, Olson JE, Roger VL, Nicholson WT, Black JL, Takahashi PY, Caraballo PJ, Bell EJ, Jacobson DJ, Larson NB, Bielinski SJ. CYP2D6 phenotypes are associated with adverse outcomes related to opioid medications. Pharmgenomics Pers Med. 2017; 10:217-227. PMID: 28769582.
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    7. Moyer AM, Skierka JM, Kotzer KE, Kluge ML, Black JL, Baudhuin LM. Clinical UGT1A1 Genetic Analysis in Pediatric Patients: Experience of a Reference Laboratory. Mol Diagn Ther. 2017 06; 21(3):327-335. PMID: 28213806.
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    8. Takahashi PY, Ryu E, Pathak J, Jenkins GD, Batzler A, Hathcock MA, Black JL, Olson JE, Cerhan JR, Bielinski SJ. Increased risk of hospitalization for ultrarapid metabolizers of cytochrome P450 2D6. Pharmgenomics Pers Med. 2017; 10:39-47. PMID: 28243137.
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    9. Bielinski SJ, St Sauver JL, Olson JE, Wieland ML, Vitek CR, Bell EJ, Mc Gree ME, Jacobson DJ, McCormick JB, Takahashi PY, Black JL, Caraballo PJ, Sharp RR, Beebe TJ, Weinshilboum RM, Wang L, Roger VL. Are patients willing to incur out-of-pocket costs for pharmacogenomic testing? Pharmacogenomics J. 2017 01; 17(1):1-3. PMID: 27779246.
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    10. Caraballo PJ, Hodge LS, Bielinski SJ, Stewart AK, Farrugia G, Schultz CG, Rohrer-Vitek CR, Olson JE, St Sauver JL, Roger VL, Parkulo MA, Kullo IJ, Nicholson WT, Elliott MA, Black JL, Weinshilboum RM. Multidisciplinary model to implement pharmacogenomics at the point of care. Genet Med. 2017 04; 19(4):421-429. PMID: 27657685.
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    11. Langman LJ, Nesher L, Shah DP, Azzi JM, Shpall EJ, Rezvani K, Black JL, Chemaly RF. Challenges in Determining Genotypes for Pharmacogenetics in Allogeneic Hematopoietic Cell Transplant Recipients. J Mol Diagn. 2016 09; 18(5):638-642. PMID: 27371869.
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    12. Nassan M, Nicholson WT, Elliott MA, Rohrer Vitek CR, Black JL, Frye MA. Pharmacokinetic Pharmacogenetic Prescribing Guidelines for Antidepressants: A Template for Psychiatric Precision Medicine. Mayo Clin Proc. 2016 07; 91(7):897-907. PMID: 27289413.
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    13. Ji Y, Skierka JM, Blommel JH, Moore BE, VanCuyk DL, Bruflat JK, Peterson LM, Veldhuizen TL, Fadra N, Peterson SE, Lagerstedt SA, Train LJ, Baudhuin LM, Klee EW, Ferber MJ, Bielinski SJ, Caraballo PJ, Weinshilboum RM, Black JL. Preemptive Pharmacogenomic Testing for Precision Medicine: A Comprehensive Analysis of Five Actionable Pharmacogenomic Genes Using Next-Generation DNA Sequencing and a Customized CYP2D6 Genotyping Cascade. J Mol Diagn. 2016 05; 18(3):438-445. PMID: 26947514.
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    14. Kalman LV, Agúndez J, Appell ML, Black JL, Bell GC, Boukouvala S, Bruckner C, Bruford E, Caudle K, Coulthard SA, Daly AK, Del Tredici A, den Dunnen JT, Drozda K, Everts RE, Flockhart D, Freimuth RR, Gaedigk A, Hachad H, Hartshorne T, Ingelman-Sundberg M, Klein TE, Lauschke VM, Maglott DR, McLeod HL, McMillin GA, Meyer UA, Müller DJ, Nickerson DA, Oetting WS, Pacanowski M, Pratt VM, Relling MV, Roberts A, Rubinstein WS, Sangkuhl K, Schwab M, Scott SA, Sim SC, Thirumaran RK, Toji LH, Tyndale RF, van Schaik R, Whirl-Carrillo M, Yeo K, Zanger UM. Pharmacogenetic allele nomenclature: International workgroup recommendations for test result reporting. Clin Pharmacol Ther. 2016 Feb; 99(2):172-85. PMID: 26479518.
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    15. Lindor NM, Schahl KA, Johnson KJ, Hunt KS, Mensink KA, Wieben ED, Klee E, Black JL, Highsmith WE, Thibodeau SN, Ferber MJ, Aypar U, Ji Y, Graham RP, Fiksdal AS, Sarangi V, Ormond KE, Riegert-Johnson DL, McAllister TM, Farrugia G, McCormick JB. Whole-Exome Sequencing of 10 Scientists: Evaluation of the Process and Outcomes. Mayo Clin Proc. 2015 Oct; 90(10):1327-37. PMID: 26434960.
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    16. Safgren SL, Suman VJ, Kosel ML, Gilbert JA, Buhrow SA, Black JL, Northfelt DW, Modak AS, Rosen D, Ingle JN, Ames MM, Reid JM, Goetz MP. Evaluation of CYP2D6 enzyme activity using a 13C-dextromethorphan breath test in women receiving adjuvant tamoxifen. Pharmacogenet Genomics. 2015 Apr; 25(4):157-63. PMID: 25714002.
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    17. Moyer AM, Walker DL, Avula R, Lapid MI, Kung S, Bryant SC, Edwards KK, Black JL, Karpyak VM, Shinozaki G, Jowsey-Gregoire SG, Ehlers SL, Romanowicz M, Litzow MR, Hogan WJ, Rundell JR, Hooten WM, Baudhuin LM. Relationship of genetic variation in the serotonin transporter gene (SLC6A4) and congenital and acquired cardiovascular diseases. Genet Test Mol Biomarkers. 2015 Mar; 19(3):115-23. PMID: 25671637.
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    18. Avula R, O'Kane D, Black JL. Alternative method of allelic discrimination. Biotechniques. 2014 Aug; 57(2):88-90. PMID: 25109294.
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    19. Skierka JM, Black JL. Analysis of compound heterozygous CYP2C19 genotypes to determine cis and trans configurations. Pharmacogenomics. 2014 Jun; 15(9):1197-205. PMID: 25141895.
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    20. Bielinski SJ, Olson JE, Pathak J, Weinshilboum RM, Wang L, Lyke KJ, Ryu E, Targonski PV, Van Norstrand MD, Hathcock MA, Takahashi PY, McCormick JB, Johnson KJ, Maschke KJ, Rohrer Vitek CR, Ellingson MS, Wieben ED, Farrugia G, Morrisette JA, Kruckeberg KJ, Bruflat JK, Peterson LM, Blommel JH, Skierka JM, Ferber MJ, Black JL, Baudhuin LM, Klee EW, Ross JL, Veldhuizen TL, Schultz CG, Caraballo PJ, Freimuth RR, Chute CG, Kullo IJ. Preemptive genotyping for personalized medicine: design of the right drug, right dose, right time-using genomic data to individualize treatment protocol. Mayo Clin Proc. 2014 Jan; 89(1):25-33. PMID: 24388019.
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    21. Hooten WM, Hartman WR, Black JL, Laures HJ, Walker DL. Associations between serotonin transporter gene polymorphisms and heat pain perception in adults with chronic pain. BMC Med Genet. 2013 Jul 30; 14:78. PMID: 23895108.
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    22. Skierka JM, Walker DL, Peterson SE, O'Kane DJ, Black JL. CYP2D6*11 and challenges in clinical genotyping of the highly polymorphic CYP2D6 gene. Pharmacogenomics. 2012 Jun; 13(8):951-4. PMID: 22676198.
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    23. Romanowicz M, Ehlers S, Walker D, Decker P, Rundell J, Shinozaki G, Litzow M, Hogan W, Mrazek D, Black JL. Testing a diathesis-stress model: potential genetic risk factors for development of distress in context of acute leukemia diagnosis and transplant. Psychosomatics. 2012 Sep-Oct; 53(5):456-62. PMID: 22652301.
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    24. Black JL, Walker DL, O'Kane DJ, Harmandayan M. Frequency of undetected CYP2D6 hybrid genes in clinical samples: impact on phenotype prediction. Drug Metab Dispos. 2012 Jan; 40(1):111-9. PMID: 22004686.
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    25. Moyer AM, Suman VJ, Weinshilboum RM, Avula R, Black JL, Safgren SL, Kuffel MJ, Ames MM, Ingle JN, Goetz MP. SULT1A1, CYP2C19 and disease-free survival in early breast cancer patients receiving tamoxifen. Pharmacogenomics. 2011 Nov; 12(11):1535-43. PMID: 21961651.
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    26. Shinozaki G, Jowsey S, Amer H, Biernacka J, Colby C, Walker D, Black J, Rundell J, Stegall M, Mrazek DA. Relationship between FKBP5 polymorphisms and depression symptoms among kidney transplant recipients. Depress Anxiety. 2011 Dec 21; 28(12):1111-8. PMID: 22134958.
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    27. Avula R, Rand A, Black JL, O'Kane DJ. Simultaneous genotyping of multiple polymorphisms in human serotonin transporter gene and detection of novel allelic variants. Transl Psychiatry. 2011 Aug 16; 1:e32. PMID: 22832606.
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    28. Black JL, Litzow MR, Hogan WJ, O'Kane DJ, Walker DL, Lesnick TG, Kremers WK, Avula R, Ketterling RP. Correlation of CYP2B6, CYP2C19, ABCC4 and SOD2 genotype with outcomes in allogeneic blood and marrow transplant patients. Leuk Res. 2012 Jan; 36(1):59-66. PMID: 21741706.
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    29. Mrazek DA, Biernacka JM, O'Kane DJ, Black JL, Cunningham JM, Drews MS, Snyder KA, Stevens SR, Rush AJ, Weinshilboum RM. CYP2C19 variation and citalopram response. Pharmacogenet Genomics. 2011 Jan; 21(1):1-9. PMID: 21192344.
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    30. Sideras K, Ingle JN, Ames MM, Loprinzi CL, Mrazek DP, Black JL, Weinshilboum RM, Hawse JR, Spelsberg TC, Goetz MP. Coprescription of tamoxifen and medications that inhibit CYP2D6. J Clin Oncol. 2010 Jun 01; 28(16):2768-76. PMID: 20439629.
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    31. Karpyak VM, Biernacka JM, Weg MW, Stevens SR, Cunningham JM, Mrazek DA, Black JL. Interaction of SLC6A4 and DRD2 polymorphisms is associated with a history of delirium tremens. Addict Biol. 2010 Jan; 15(1):23-34. PMID: 20002020.
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    32. Kramer WE, Walker DL, O'Kane DJ, Mrazek DA, Fisher PK, Dukek BA, Bruflat JK, Black JL. CYP2D6: novel genomic structures and alleles. Pharmacogenet Genomics. 2009 Oct; 19(10):813-22. PMID: 19741566.
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    33. Mrazek DA, Rush AJ, Biernacka JM, O'Kane DJ, Cunningham JM, Wieben ED, Schaid DJ, Drews MS, Courson VL, Snyder KA, Black JL, Weinshilboum RM. SLC6A4 variation and citalopram response. Am J Med Genet B Neuropsychiatr Genet. 2009 Apr 05; 150B(3):341-51. PMID: 18618621.
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    34. Karpyak VM, Kim JH, Biernacka JM, Wieben ED, Mrazek DA, Black JL, Choi DS. Sequence variations of the human MPDZ gene and association with alcoholism in subjects with European ancestry. Alcohol Clin Exp Res. 2009 Apr; 33(4):712-21. PMID: 19175764.
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    35. Rasmussen KG, Black JL. Serotonin transporter gene status and electroconvulsive therapy outcomes: a retrospective analysis of 83 patients. J Clin Psychiatry. 2009 Jan; 70(1):92-4. PMID: 19192461.
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    36. Overeem S, Black JL, Lammers GJ. Narcolepsy: immunological aspects. Sleep Med Rev. 2008 Apr; 12(2):95-107. PMID: 18291691.
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    37. Mrazek M, Koenig B, Skime M, Snyder K, Hook C, Black J, Mrazek D. Assessing attitudes about genetic testing as a component of continuing medical education. Acad Psychiatry. 2007 Nov-Dec; 31(6):447-51. PMID: 18079506.
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    38. McAlpine DE, O'Kane DJ, Black JL, Mrazek DA. Cytochrome P450 2D6 genotype variation and venlafaxine dosage. Mayo Clin Proc. 2007 Sep; 82(9):1065-8. PMID: 17803873.
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    39. Black JL, O'Kane DJ, Mrazek DA. The impact of CYP allelic variation on antidepressant metabolism: a review. Expert Opin Drug Metab Toxicol. 2007 Feb; 3(1):21-31. PMID: 17269892.
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    40. Sutor B, Hansen MR, Black JL. Obsessive compulsive disorder treatment in patients with Down syndrome: a case series. Downs Syndr Res Pract. 2006 Jul; 10(1):1-3. PMID: 16869367.
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    41. Rasmussen KG, Mueller M, Kellner CH, Knapp RG, Petrides G, Rummans TA, Husain MM, O'connor MK, Black JL, Sampson S, Fink M. Patterns of psychotropic medication use among patients with severe depression referred for electroconvulsive therapy: data from the Consortium for Research on Electroconvulsive Therapy. J ECT. 2006 Jun; 22(2):116-23. PMID: 16801827.
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    42. Black JL. Narcolepsy: a review of evidence for autoimmune diathesis. Int Rev Psychiatry. 2005 Dec; 17(6):461-9. PMID: 16401544.
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    43. Black JL, Silber MH, Krahn LE, Avula RK, Walker DL, Pankratz VS, Fredrickson PA, Slocumb NL. Studies of humoral immunity to preprohypocretin in human leukocyte antigen DQB1*0602-positive narcoleptic subjects with cataplexy. Biol Psychiatry. 2005 Sep 15; 58(6):504-9. PMID: 16043129.
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    44. Black JL, Avula RK, Walker DL, Silber MH, Krahn LE, Pankratz VS, Fredrickson PA, Slocumb NL. HLA DQB1*0602 positive narcoleptic subjects with cataplexy have CSF lgG reactive to rat hypothalamic protein extract. Sleep. 2005 Sep; 28(9):1191-2. PMID: 16268389.
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    45. Black JL, Silber MH, Krahn LE, Fredrickson PA, Pankratz VS, Avula R, Walker DL, Slocumb NL. Analysis of hypocretin (orexin) antibodies in patients with narcolepsy. Sleep. 2005 Apr; 28(4):427-31. PMID: 16171287.
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    46. Matsuyama Z, Yanagisawa NK, Aoki Y, Black JL, Lennon VA, Mori Y, Imoto K, Inuzuka T. Polyglutamine repeats of spinocerebellar ataxia 6 impair the cell-death-preventing effect of CaV2.1 Ca2+ channel--loss-of-function cellular model of SCA6. Neurobiol Dis. 2004 Nov; 17(2):198-204. PMID: 15474358.
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    47. Mi R, Sia GM, Rosen K, Tang X, Moghekar A, Black JL, McEnery M, Huganir RL, O'Brien RJ. AMPA receptor-dependent clustering of synaptic NMDA receptors is mediated by Stargazin and NR2A/B in spinal neurons and hippocampal interneurons. Neuron. 2004 Oct 14; 44(2):335-49. PMID: 15473971.
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    48. Black JL. The voltage-gated calcium channel gamma subunits: a review of the literature. J Bioenerg Biomembr. 2003 Dec; 35(6):649-60. PMID: 15000525.
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    49. Black JL. Genome projects and gene therapy: gateways to next generation biological weapons. Mil Med. 2003 Nov; 168(11):864-71. PMID: 14680038.
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    50. McCully RB, Karon BL, Rummans TA, Black JL, Andreen KM, Oh JK, Seward JB, Tajik AJ. Frequency of left ventricular dysfunction after electroconvulsive therapy. Am J Cardiol. 2003 May 01; 91(9):1147-50. PMID: 12714169.
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    51. Ansell SM, Ackerman MJ, Black JL, Roberts LR, Tefferi A. Primer on medical genomics. Part VI: Genomics and molecular genetics in clinical practice. Mayo Clin Proc. 2003 Mar; 78(3):307-17. PMID: 12630584.
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    52. Black JL, Krahn LE, Pankratz VS, Silber M. Search for neuron-specific and nonneuron-specific antibodies in narcoleptic patients with and without HLA DQB1*0602. Sleep. 2002 Nov 01; 25(7):719-23. PMID: 12405606.
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    53. Black JL, Krahn LE, Jalal SM. Voltage-gated calcium channel gamma 2 subunit gene is not deleted in velo-cardio-facial syndrome. Mol Psychiatry. 2001 Jul; 6(4):461-4. PMID: 11443534.
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    54. Flaherty ML, Infante M, Tinsley JA, Black JL. Factitious hypertension by pseudoephedrine. Psychosomatics. 2001 Mar-Apr; 42(2):150-2. PMID: 11239129.
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    55. Krahn LE, Black JL, Silber MH. Narcolepsy: new understanding of irresistible sleep. Mayo Clin Proc. 2001 Feb; 76(2):185-94. PMID: 11213307.
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    56. Sharp AH, Black JL, Dubel SJ, Sundarraj S, Shen JP, Yunker AM, Copeland TD, McEnery MW. Biochemical and anatomical evidence for specialized voltage-dependent calcium channel gamma isoform expression in the epileptic and ataxic mouse, stargazer. Neuroscience. 2001; 105(3):599-617. PMID: 11516827.
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    57. Saad DA, Black JL, Krahn LE, Rummans TA. ECT post eye surgery: two cases and a review of the literature. J ECT. 2000 Dec; 16(4):409-14. PMID: 11314879.
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    58. Gursky JT, Rummans TA, Black JL. ECT administration in a patient after craniotomy and gamma knife surgery: a case report and review. J ECT. 2000 Sep; 16(3):295-9. PMID: 11005053.
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    59. Black JL, Nelson TR, Snow K, Lennon VA. Immunogenicity of P/Q-type calcium channel in small cell lung cancer: investigation of alpha1 subunit polyglutamine expansion. Tissue Antigens. 1999 Dec; 54(6):592-6. PMID: 10674974.
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    60. Black JL, Lennon VA. Identification and cloning of putative human neuronal voltage-gated calcium channel gamma-2 and gamma-3 subunits: neurologic implications. Mayo Clin Proc. 1999 Apr; 74(4):357-61. PMID: 10221464.
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    61. Black JL, Lamke GT, Walikonis JE. Serologic survey of adult patients with obsessive-compulsive disorder for neuron-specific and other autoantibodies. Psychiatry Res. 1998 Dec 14; 81(3):371-80. PMID: 9925188.
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    62. Black JL, Griesmann GE, Erickson J, Kryzer TJ, Lamke GT, Lennon VA. Lambert-Eaton myasthenic syndrome. Antigenicity of recombinant human P/Q-type calcium channel alpha 1 subunit putative ion pore region (domain IV, S5-S6). Ann N Y Acad Sci. 1998 May 13; 841:691-5. PMID: 9668316.
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    63. Black JL, Allison TG, Williams DE, Rummans TA, Gau GT. Effect of intervention for psychological distress on rehospitalization rates in cardiac rehabilitation patients. Psychosomatics. 1998 Mar-Apr; 39(2):134-43. PMID: 9584539.
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    64. Moellentine C, Rummans T, Ahlskog JE, Harmsen WS, Suman VJ, O'Connor MK, Black JL, Pileggi T. Effectiveness of ECT in patients with parkinsonism. J Neuropsychiatry Clin Neurosci. 1998; 10(2):187-93. PMID: 9608407.
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    65. Black JL, Barth EM, Williams DE, Tinsley JA. Stiff-man syndrome. Results of interviews and psychologic testing. Psychosomatics. 1998 Jan-Feb; 39(1):38-44. PMID: 9538674.
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    66. Tinsley JA, Barth EM, Black JL, Williams DE. Psychiatric consultations in stiff-man syndrome. J Clin Psychiatry. 1997 Oct; 58(10):444-9. PMID: 9375596.
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    67. Edberg CE, Black JL, Rome JD, Lennon VA. Acetylcholine receptor antibodies in tardive dyskinesia. Am J Psychiatry. 1994 Apr; 151(4):622-3. PMID: 7908502.
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    68. Black JL. Obsessive compulsive disorder: a clinical update. Mayo Clin Proc. 1992 Mar; 67(3):266-75. PMID: 1545595.
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    69. Soundy TJ, Black JL, Peterson GC, Zimmerman D. Psychosis in a male pseudohermaphrodite with 17-hydroxylase deficiency. Psychosomatics. 1992; 33(4):452-4. PMID: 1461971.
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    70. Black JL, Bruce BK. Behavior therapy: a clinical update. Hosp Community Psychiatry. 1989 Nov; 40(11):1152-8. PMID: 2680882.
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